SE3020622

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_759
  • Malus domestica
  • SE3020622
  • Mutator
  • MadM39
  • MDC006754.294:18199-18415
  • GAAAAGACA
  • GGACATGGATCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAAAGACA             CTTR     C    Y       C    G                  Y         A   A     CTACAATCA    CTCACTTTAAA
         GGACATGGATCCT    GGATC AATT TCCTAAT CTAG GATCCATTAATCCGGACC TTGAAATTT ATC AACGG         GGAG           
         |||||||||||||    ||||| |||| ||||||| |||| |||||||||||||||||| ||||||||| ||| |||||         ||||            
         CCTGTACCTAGGA    CCTGG TTAA AGGATTA GATC CTAGGTAGTTAGGCCTGG AACTTTAAA TAG TTGCC         TTTC           
ACAGAAAAG             YAYG     A    C       T    K                  C         C   M     -------AA    AATAAMATTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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