SE3020625

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_762
  • Malus domestica
  • SE3020625
  • Mutator
  • MadM34
  • MDC016546.77:6056-6282
  • CTTTTGATT
  • AAAGAGATCGTCTCCGGATCTCTCCCTCCAAAACCCAGGGATCAAGTMATTCGAATCTTTAAAATTTGATCAATCAGCTAAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTTGATTGA       T G   C                  A C            M   C AA     A  A       AAT    ---       -AGAGA    AG    AA
           AAAGAGA C TCT CGGATCTCTCCCTCCAAA C CAGGGATCAAGT ATT G  TCTTT AA TTTGATC   CAGC   TAAAAAT      AGTT  TAAA  
           ||||||| | ||| |||||||||||||||||| | |||||||||||| ||| |  ||||| || |||||||   ||||   |||||||      ||||  ||||   
           TTTCTCT G AGA GCCTAGAGAGGGAGGTTT G GTCCCTAGTTCA TAA C  AGAAA TT AAACTAG   GTTG   GTTTTTA      TCGA  ATTT  
ATAGTTTTCCC       T G   A                  C T            C   A CC     C  C       ---    CCA       ATAATA    AA    AW
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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