SE3020627

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_764
  • Malus domestica
  • SE3020627
  • Mutator
  • MadM109
  • MDC011847.208:5203-5426
  • TAATTAAAG
  • GGGAATTGGATGCTCTCCGAGGCAAAYCCTCGGGATCCTCCTAACTCAATAACACGGGCCGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTAAA           G          C   Y  TCG         TA     ATA       C     AATMATT  A        C       M   T  -TTATAA   TT
        GGGAATTGGAT CTCTCCGAGG AAA CC   GGATCCTCC  ACTCA   ACACGGG CGTTG       GA TTTTGATT AACGGCT CAA TA       CTT  
        ||||||||||| |||||||||| ||| ||   |||||||||  |||||   ||||||| |||||       || |||||||| ||||||| ||| ||       |||   
        TCCTTAACCTA GAGAGGCTCC TTT GG   CCTAGGAGG  TGGGT   TGTGCCT GTAAC       CT AAAATTAG TTGCCGA GTT GT       GAA  
GAAATTAA           A          A   -  TAG         CC     GAA       A     -------  -        R       T   T  TYCYYAR   GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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