Plant MITE

SE3020630

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_767
Malus domestica
SE3020630
Mutator
MadM8
MDC019409.130:3083-3271
TTTTTAATA
TTAATAGAGTAATGCTAGG

Secondary structure and sequence

TSD TIR

5'

3'

TTT    -T  A           TAAAC      -TTA      A    -ACAA              ----CACTAATA   AATAAGC  G     CA
   TTAA  AG GTAATGCTAGG     CAATTT    AGACCA ATTT     ACTATGTGATGTGG            GGA       AC TTAAT  
   ||||  || |||||||||||     ||||||    |||||| ||||     ||||||||||||||            |||       || |||||  A
   AATT  TC CATTACGATCT     GTTAGA    TTTGGT TAAA     TGGTATACTACACC            CCT       TG AATTG  
 AT    TT  C           -CTCT      TAAA      A    ACATC              AACAACTACTAA   --AATAA  -     AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020630

TTTTTAATAGAGTAATGCTAGGTAAACCAATTTTTAAGACCAAATTTACAAACTATGTGATGTGGCACTAATAGGAAATAAGCACGTTAATCAATAGTTAAGTAATAATCCAATCATCAACAACCACATCATATGGTCTACAAAATATGGTTTAAATAGATTGTCTCTCTAGCATTACCCTTTTTAATA

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