SE3020631

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_768
  • Malus domestica
  • SE3020631
  • Mutator
  • MadM23
  • MDC012824.188:6591-6831
  • ATTAAAATG
  • GGGAGCATTTTTGCTCACCACCATAAACTATGGTGTATACTCACCATACACCTAATCAATTGACACGTGTCATTTCACTTARKYTTGGTTAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAAAATG                          A           AC          C                              RKY                 AAAATTGAAAA
         GGGAGCATTTTTGCTCACCACCATAA CTATGGTGTAT  TCACCATACA CTAATCAATTGACACGTGTCATTTCACTTA   TTGGTTAATTTTTTTTC           
         |||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||            
         CCCTCGTAAAAACGAGTGGTGGTATT GATACCACATA  AGTGGTATGT GATTAGTTAACTGTGTACAGTAAAGTGAAT   GATCAATTGAAAGTGTA           
 TAAAATTA                          C           CC          A                              TGA                 ATTTACAATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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