SE3020634

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_771
  • Malus domestica
  • SE3020634
  • Mutator
  • MadM15
  • MDC018306.234:11502-11716
  • TGTTTTATG
  • GGGAAAGGGATCCTCTGGATCCCTTCCTTCTAATCCACCAAATCAAGGAATCTGTGTCGTTGAAATTTGATTAAACAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTTTTAT            --                               CAA  A                       A   A   ACAAAC    GCCCACTTTAA
        GGGAAAGGGATC  CTCTGGATCCCTTCCTTCTAATCCACCAAAT   GG ATCTGTGTCGTTGAAATTTGATT AAC ACT      AGGG           
        ||||||||||||  |||||||||||||||||||||||||||||||   || ||||||||||||||||||||||| ||| |||      ||||            
        TCCTTTCCCTAG  GAGGCCTAGGGAAGGAGGATTAGGTGGTTTA   CC TAGACACGGCAACTTTAAACTAG TTG TGA      TTCA           
GTATTTCG            AA                               ATC  C                       G   C   -----C    ATAATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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