Plant MITE

SE3050636

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_773
Malus domestica
SE3050636
PIF/harbinger
MadP21
MDC013764.272:25497-25899
TTA
AGAACATCTCCAAAGGAGATATCAAATATAGT

Secondary structure and sequence

TSD TIR

5'

3'

TT   A                A        A       --  A  - TTATTTGATGGTTGATGTGACAAATTGAATACAAGTGCTAAATTCTCTTATTTTCCAATGGATGTGTCAAATATTTATTTTATTATTTTATTGGGCCTAGAGTTACATTAACTATTAAAAAATAATCAAAATTAGTTTTAGTTTTTATTCTATTG
  AGA CATCTCCAAAGGAGAT TCAAATAT GTATGTC  AA AT T                                                                                                                                                           
  ||| |||||||||||||||| |||||||| |||||||  || || |                                                                                                                                                           G
  TCT GTAGAGGTTTCCTCTA AGTTTATA CGGTTTA  CT AT T                                                                                                                                                           
AT   G                C        -       TC  A  T TCTGATATTTCACAAGAGGTTACCTATACAGTATATACTACACTGTACACTCAGTAAACTGAGGAATGAAAGATTAACGGAAAAAAAAAAWATTGTTTGTTTCTTACTCAGTTTATATAAATTAAATTAAAAATTACGTACTCAGGGTAATTGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050636

TTAGAACATCTCCAAAGGAGATATCAAATATAGTATGTCAAAATTTTATTTGATGGTTGATGTGACAAATTGAATACAAGTGCTAAATTCTCTTATTTTCCAATGGATGTGTCAAATATTTATTTTATTATTTTATTGGGCCTAGAGTTACATTAACTATTAAAAAATAATCAAAATTAGTTTTAGTTTTTATTCTATTGGTTGTTAATGGGACTCATGCATTAAAAATTAAATTAAATATATTTGACTCATTCTTTGTTTGTTAWAAAAAAAAAAGGCAATTAGAAAGTAAGGAGTCAAATGACTCACATGTCACATCATATATGACATATCCATTGGAGAACACTTTATAGTCTTTTAATCCTATTTGGCATATTTGACATCTCCTTTGGAGATGGTCTTA

Copy Cancel