SE3050640

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_777
  • Malus domestica
  • SE3050640
  • PIF/harbinger
  • MadP22
  • MDC021443.429:4623-5100
  • TTA
  • AGGGGGGTGTAGTCAAACTGGGATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                          ------   A C         GA -      -   C    GTAGTCAATTAAAAGATTTTAAAGGATTTTAGAATCCATTCAAATATAGGTGTAGTCAATTAAGGGATTTTAGAATCCTTTAAAATCTAGGTGTAGTCAATTAAAAGATTTTAAAGGGTTTTAAAATCCATCCAAATCTAAGTGTATTAAAAAAATTAAGATTTTGGAGGATTTCAA
  AGGGGGGTGTAGTCAAACTGGGATTT      GAG G ATTTTAAAA  C TTTAAA ATC TAGT                                                                                                                                                                                 
  ||||||||||||||||||||||||||      ||| | |||||||||  | |||||| ||| ||||                                                                                                                                                                                 T
  TCCCCCCACATCAGTTTGATTCTAAA      TAA A ATTTCCTGA  A TTATCA TAT CTAA                                                                                                                                                                                 
AT                          ATGTRK   - -         -- A      C   -    ACTATCCTAAATTCTCCTAATTTCTGAGGAWGTTTTAAGTATACCTAAAAATTTCTTAAACTTACCTAAACTACCTAACARCACCTTCCTAAACTTTAGGATCCCCCACTCCAACCTAAGAAAAATTAGAACCAATATATATGAAAACCGAGAGTTTAGGGTGTTTTAGGTGTTGAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End