Plant MITE

SE3020642

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_779
Malus domestica
SE3020642
Mutator
MadM7
MDC022481.311:3501-3717
GTATTTGCC
GTATTTGCCGGATCAGGATCATCTCCTGAGCAGATGGAGAGGATCCTCCTGACCAGGTTCATCGGGCCGTTCATTTTTTATCCAACGGCTATAA

Secondary structure and sequence

TSD TIR

5'

3'

    TT   C           A                                                    T                    TTATTATAA    T
 GTA  TGC GGATCAGGATC TCTCCTGAGCAGATGGAGAGGATCCTCCTGACCAGGTTCATCGGGCCGTTCA TTTTTATCCAACGGCTATAA         CTTT 
 |||  ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||         |||| A
 CGT  ATG CCTGGTCCTAG AGAGGACTCGTCTACCTCTCCTAGGAGGACTGGTTCGGGTAGCCCGGCAAGT AAAAATAGGTTGCCGATGTT         GGGA 
C   TT   -           G                                                    T                    TATCCTTCG    G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020642

GTATTTGCCGGATCAGGATCATCTCCTGAGCAGATGGAGAGGATCCTCCTGACCAGGTTCATCGGGCCGTTCATTTTTTATCCAACGGCTATAATTATTATAACTTTTAGAGGGGCTTCCTATTTGTAGCCGTTGGATAAAAATTGAACGGCCCGATGGGCTTGGTCAGGAGGATCCTCTCCATCTGCTCAGGAGAGGATCCTGGTCCGTATTTGCC

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