SE3020643

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_780
  • Malus domestica
  • SE3020643
  • Mutator
  • MadM9
  • MDC042921.6:2005-2245
  • CTAAAACAA
  • GAATGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTAAAACAA        ATAATC     T                      A   CTC     A   TCATTCM  G  C          C  AAA     TTAA     ---TT      AA
         GAATGAGG      TCCGG TCCTCTTTGTGAGGATCCTAGG ATC   AAATC TGT       TC TA ATCGTACGGT AG   TCATT    ATACT     TATTTA  
         ||||||||      ||||| |||||||||||||||||||||| |||   ||||| |||       || || |||||||||| ||   |||||    |||||     ||||||   
         CTTATTCC      AGGCC AGGAGAAACACTCCTAGGATCC TAG   TTTAG ACA       AG AT TAGTATGCCA TC   AGTAG    TATGA     ATAAAT  
AACAAAATC        CAGGAA     T                      C   TAA     C   TACAART  Y  A          R  AAA     --TC     WAAAT      TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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