SE3020645

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_782
  • Malus domestica
  • SE3020645
  • Mutator
  • MadM5
  • MDC001653.268:13756-13944
  • GTCTTTGAG
  • TCTTTGAGGAGATATTTTTCAGTYTGATCGGCACACGAGGTGGTACATCACGTGTCATTATACAAATAGTGGGAAATGTGTGTTAAAAAGTTAATAACTT

Secondary structure and sequence

TSD    TIR
5'



3'
G  TTT  G   ATA     CA  -Y    C  C     A         T  C    CA    AC  A           GTG    -AAA     A
 TC   GA GAG   TTTTT  GT  TGAT GG ACACG GGTGGTACA CA GTGT  TTAT  AA TAGTGGGAAAT   TGTT    AAGTT 
 ||   || |||   |||||  ||  |||| || ||||| ||||||||| || ||||  ||||  || |||||||||||   ||||    ||||| A
 AG   CT CTC   AAAAA  TA  ACTG CT TGTGC CTACCATGT GT CACA  AATA  TT ATCACCTTTTA   ATAA    TTCAA 
G  TTT  G   WTW     AA  AC    T  T     -         Y  A    AA    CA  C           -AA    AAAA     T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End