Plant MITE

SE3020646

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_783
Malus domestica
SE3020646
Mutator
MadM10
MDC012640.167:3786-4024
TATTTATAA
AGGAGGCAGATTATCTGCCCTCCTGTTTAGGTGCCTTTCTCATCTTCTCTTATTTTGTGCGGTCATGGTTAAGTCACTTCAACATTTTATATT

Secondary structure and sequence

TSD TIR

5'

3'

TATTTATA      C     A               A    C T                   T   C                 T               ---------AACAT      AGA
        AGGAGG AGATT TCTGCCCTCCTGTTT GGTG C TTCTCATCTTCTCTTATTT GTG GGTCATGGTTAAGTCAC TCAACATTTTATATT              TTTTAT   
        |||||| ||||| ||||||||||||||| |||| | ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||              ||||||   G
        TCCTCC TCTAA AGACGGGAGGATAGA CCAC G AAGAGTAGGAGGGGATAAA CAC CCAGTACTAATTCAGTG AGTTGTAAAATATAA              AGAATA   
AATATTTA      A     C               A    A T                   -   A                 C               GAATAACAAAAAAC      ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020646

TATTTATAAGGAGGCAGATTATCTGCCCTCCTGTTTAGGTGCCTTTCTCATCTTCTCTTATTTTGTGCGGTCATGGTTAAGTCACTTCAACATTTTATATTAACATTTTTATAGAGATAATAAGACAAAAAACAATAAGAATATAAAATGTTGACGTGACTTAATCATGACCACACAAATAGGGGAGGATGAGAATGACACCAAGATAGGAGGGCAGACAATCTACCTCCTATTTATAA

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