SE3020660

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_797
  • Malus domestica
  • SE3020660
  • Mutator
  • MadM14
  • MDC001893.279:3312-3819
  • TTGAAAAAG
  • AAAGAGTAAATTATATCAATGGTCCCTGAACTTTAATCAAATTGGAGCAATGGTCCTCAACTAAAAATCCATTACCATTGGTCTCTCAACTCATCAAAATATGTAGCTATGGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TTGAA            A  T       C   G     TAA    A               -                           T  C             A             ATTTT G      T   C  -     CAAAATAAGTTATGTTGGAAGGATCATTGCTACAATTGGGGTCCCTCAACTTATCAAAACATGTAGCTATGATCATTTTTGTCAACTTCGTTAGAATTTTGTCAAAATGAGTT
     AAAGAGTAAATT TA CAATGGT CCT AACTT   TCAA TTGGAGCAATGGTCC TCAACTAAAAATCCATTACCATTGGTC CT AACTCATCAAAAT TGTAGCTATGGTC     C TCAACT CGT AA TTTGT                                                                                                                 
     |||||||||||| || ||||||| ||| |||||   |||| ||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||     | |||||| ||| || |||||                                                                                                                  
     TTTCTCATTTGA AT GTTACTA GGA TTGAA   AGTT AACCTCGTTACTAGG AGTTGATTTTTAGGTAATGGTAACCAG GA TTGAGTAGTTTTA ACGTCGATATCAG     G AGTTGA TTT TT AGTAA                                                                                                                 
AAAAG            C  C       A   A     TTG    -               G                           T  T             C             ----- G      -   -  A     TGGTAATCAGGGAGTTGAAATTAGGTTGACCTCTTTACCAGGGAGTTGAACTTGGGTTAACCTCGTTACTAGGGAGTTGAAATTGAGTTAACATCGTTACCAGGAAGGTTGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End