SE3020666

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_803
  • Malus domestica
  • SE3020666
  • Mutator
  • MadM34
  • MDC013726.266:8563-8786
  • TAGAAATTG
  • TGGGAARGAGATCATCTCCAKATCTMTTCTACCAAAGCTACCGGATCAAGTGATCCGTGCCTTTAAATTTTCATCCAACGTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGAAAT      R      A    CAK    M         A                     T      A  T            T    --YGTCCCACCTG      TT
       TGGGAA GAGATC TCTC   ATCT TTCTACCAA GCTACCGGATCAAGTGATCCG GCCTTT AA TTTCATCCAACG CCAA             TTTTGA  
       |||||| |||||| ||||   |||| ||||||||| ||||||||||||||||||||| |||||| || |||||||||||| ||||             ||||||   
       ATCCTT CTCTAG AGAG   TAGA AAGATGGTT CGGTGGTCTAGTTTACTAGGC CGGAAA TT AAAGTAGGTTGC GGTT             AAAATT  
GTTAAAG      T      G    ACC    G         C                     C      C  T            C    TATAATAATATTG      CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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