Plant MITE

SE3020667

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_804
Malus domestica
SE3020667
Mutator
MadM48
MDC017513.48:40596-40812
TATTTCGAG
TCGAGGGAAGAGTCCTCTCCTTGAGCTCAGGATGGGGATCCTCCTGACCAGCTCCATCTGGGCCGTTCAAATTTAATCCAGCGGTTGCAA

Secondary structure and sequence

TSD TIR

5'

3'

TATT      ----      --      C  T     C               C        T                                 G   TTATTATAACTTTT G   GC
    TCGAGG    GAAGAG  TCCTCT CT GAGCT AGGATGGGGATCCTC TGACCAGC CCATCTGGGCCGTTCAAATTTAATCCAGCGGTT CAA              A AGG  
    ||||||    ||||||  |||||| || ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||              | |||   
    AGCTTT    CTTCTC  AGGAGA GA CTCGA TCCTACCTCTAGGAG ACTGGTCG GGTAGACCCGGCAAGTTTAAATTAGGTTGCCGA GTT              T TCC  
   G      ATGK      CT      M  -     A               A        -                                 G   -------------- G   CC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020667

TATTTCGAGGGAAGAGTCCTCTCCTTGAGCTCAGGATGGGGATCCTCCTGACCAGCTCCATCTGGGCCGTTCAAATTTAATCCAGCGGTTGCAATTATTATAACTTTTAGAGGGCCCCCTGTTTGGAGCCGTTGGATTAAATTTGAACGGCCCAGATGGGCTGGTCAAGAGGATCTCCATCCTAAGCTCAGMAGAGGATCCTCTTCKGTATTTCGAG

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