Plant MITE

SE3020668

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_805
Malus domestica
SE3020668
Mutator
MadM30
MDC004070.265:2235-2402
ATTTGAGGT
TTTGAGGTTGGTTAGTACTATTCACACACATTTT

Secondary structure and sequence

TSD TIR

5'

3'

  A        -   TT   --A    TC    A      GTTT   CTCC       C   G        ----    -C     TCTTTTT
   TTTGAGGT TGG  AGT   CTAT  ACAC CATTTT    TAC    TACACAC CTT TTAATTTT    TGTT  ATTGA       
   |||||||| |||  |||   ||||  |||| ||||||    |||    ||||||| ||| ||||||||    ||||  |||||       C
   GAGTTTCA ACC  TCG   GATA  TGTG GTAAAA    ATG    GTGTGTG GAA AGTTAAAG    ACAG  TAGCT       
TTG        C   --   ATA    --    G      ----   -AAA       A   G        GTCG    TT     TACTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020668

ATTTGAGGTTGGTTAGTACTATTCACACACATTTTGTTTTACCTCCTACACACCCTTGTTAATTTTTGTTCATTGATCTTTTTCAATTCATTCGATTTGACAGCTGGAAATTGAGAAGAGTGTGTGAAAGTAAAAATGGGTGTATAGATAGCTCCACACTTTGAGGTT

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