SE3020670

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_807
  • Malus domestica
  • SE3020670
  • Mutator
  • MadM11
  • MDC020174.201:14658-14821
  • ATGATTTTG
  • GATTTTGGGGTGTGATATCCACACACCCCTTTTTACTTCTCACACACCCTTCTAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AT    T         A                                    --C      TCGG    CG    GGATGAA
  GATT TGGGGTGTG TATCCACACACCCCTTTTTACTTCTCACACACCCTT   TAATTT    CCGT  GATC       
  |||| ||||||||| ||||||||||||||||||||||||||||||||||||   ||||||    ||||  ||||       A
  TTAG ACCCCACAC ATAGGTGTGTGGGGAAAAATGAAGAGTGTGTGGGGA   ATTAAA    GGCA  CTAG       
TT    T         G                                    ACA      TACA    -A    AAGAART
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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