Plant MITE

SE3040671

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_808
Malus domestica
SE3040671
CACTA
MadC1
MDC009560.247:662-1022
TTA
ACACTATGTTTGGATGA

Secondary structure and sequence

TSD TIR

5'

3'

TT                 AAAAATTTAAGATTAC       T   --     GA   ------------   T     TGACGGGATTTTATTTTCTAGAATTTGTGAATTTTCTTGTTTGGTTAACCTAAAAGAATAATGGAATTGAATACGGAATTTGTTATTTTTAAACTCTCAATCATAGAAATTGAGAAAT
  ACACTATGTTTGGATGA                TAAGGAA TTC  AAAAT  TGG            AAA TGAAA                                                                                                                      
  |||||||||||||||||                ||||||| |||  |||||  |||            ||| |||||                                                                                                                       
  TGTGATACAAACTTACT                TCTTAAT TTG  CTTTA  AAC            TTT AACTG                                                                                                                      
AT                 ---------------C       -   AA     --   TCATTTTCAATA   -     TACGTAGTTAAGGGAATAAACCTAAGTATTAGTATCTTTAAATCTTAAAGACGTACCTTTTTTTGAACCTTAAACCCTGGAGGTTAAAGGTTCAAATTTAAGATATATTTATCTACAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3040671

TTACACTATGTTTGGATGAAAAAATTTAAGATTACTAAGGAATTTCAAAATGATGGAAATTGAAATGACGGGATTTTATTTTCTAGAATTTGTGAATTTTCTTGTTTGGTTAACCTAAAAGAATAATGGAATTGAATACGGAATTTGTTATTTTTAAACTCTCAATCATAGAAATTGAGAAATGACATCTATTTATATAGAATTTAAACTTGGAAATTGGAGGTCCCAAATTCCAAGTTTTTTTCCATGCAGAAATTCTAAATTTCTATGATTATGAATCCAAATAAGGGAATTGATGCATGTCAATTTATAACTTTTACTCAAATTTCAAGTTTAATTCTCTCATTCAAACATAGTGTTA

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