Plant MITE

SE3020674

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_811
Malus domestica
SE3020674
Mutator
MadM26
MDC008585.426:9515-9742
GAGAAATAT
GGAATTGGATCTGCTCCAGATCTTAGTGTCCGAAGCTCAGGAATCAATTCATCTGGGCC

Secondary structure and sequence

TSD TIR

5'

3'

GAGAAATAT                 A              A    C   A     T           ACACAAATTCAATCCAAC  TCCCCATTAACTCATTTTCCTGGCCCACCACACAA
         GGAATTGGATCTGCTCC GATCTTAGTGTCCG AGCT AGG ATCAA TCATCTGGGCC                  GG                                   
         ||||||||||||||||| |||||||||||||| |||| ||| ||||| |||||||||||                  ||                                    
         CCTTAACCTAGGCGAGG TTGGAATCACAGGC TCGG TCC TAGTT AGTAGACCCGG                  CG                                   
TATAAAGAG                 C              C    A   C     T           ------------------  ACTAACCACACATTTTCTTTAATCACGACAACTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020674

GAGAAATATGGAATTGGATCTGCTCCAGATCTTAGTGTCCGAAGCTCAGGAATCAATTCATCTGGGCCACACAAATTCAATCCAACGGTCCCCATTAACTCATTTTCCTGGCCCACCACACAAAATCAACAGCACTAATTTCTTTTACACACCAATCAGCGGCCCAGATGATTTGATCCCTAGGCTCCGGACACTAAGGTTCGGAGCGGATCCAATTCCGAGAAATAT

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