SE3020675

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_812
  • Malus domestica
  • SE3020675
  • Mutator
  • MadM34
  • MDC016095.139:1148-1364
  • CAAATTAAC
  • GAAGGAGATCCTCTCCGAATCTCTTCCACCATGGCCACCGGATCAAGTGATTTGGGCTTTTGAAATTTTATCCAATGGCYCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAATTAACA              C GA             T                   T                    C      Y  AAATTATTATA     TAAG
          GAAGGAGATCCTCT C  ATCTCTTCCACCA GGCCACCGGATCAAGTGAT TGGGCTTTTGAAATTTTATC AATGGC CA           GTTTT    
          |||||||||||||| |  ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||           |||||    G
          CTTTCTCTAGGAGA G  TAGAGAAGGTGGT CCGGTGGCCTAGTTTACTA ACCCGGAAACTTTAAAGTAG TTGCCG GT           CAAAA    
CAATTAAACC              T AC             T                   T                    A      G  --------GGA     CTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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