SE3020676

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_813
  • Malus domestica
  • SE3020676
  • Mutator
  • MadM10
  • MDC022726.213:962-1200
  • CATTTCATA
  • GGAGGCAGATTGTCTACCCTCCTGTTATAGTGCCCTTCTCATCCTCTCCTATTTGTGCGGTCACGGTTAAGCCATGTCAACATTTTATATTGATTTTTTTATC

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTTCATA               A            A      -                                     C                  ----GAT      A  GAGAT
         GGAGGCAGATTGTCT CCCTCCTGTTAT GTGCCC TTCTCATCCTCTCCTATTTGTGCGGTCACGGTTAAGC ATGTCAACATTTTATATT       TTTTTT TC     
         ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||| ||      
         CCTCCGTCTAACAGA GGGAGGACAATA CACGGG AAGGGTAGGGGAGGATAAACACGCCAGTGCCAATTCG TGCAGTTGTAAAATATAA       AAAAAA AG     
ATACTTTAC               C            C      G                                     A                  GGATAAC      C  AATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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