Plant MITE

SE3020680

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_817
Malus domestica
SE3020680
Mutator
MadM5
MDC020884.221:6886-7069
CCATAGAGA
GAGAGAAATTTTTAATTGTGAC

Secondary structure and sequence

TSD TIR

5'

3'

  CCATA      AA        T     AGGA       -        C  A    T          A      AATTTTATTTTTT     A
       GAGAGA  TTTTTAAT GTGAC    ATATGAG TGGTACAC AC TGTT TTATGTAAGT GTGGGA             AAGTT 
       ||||||  |||||||| |||||    ||||||| |||||||| || |||| |||||||||| ||||||             ||||| T
       CTCTCT  AAAAGTTA TACTG    TGTGCTC ACCATGTG TG ACAA AATATATTTA CATCCT             TTCAA 
AGATACC      -A        -     GTAG       T        A  C    T          C      ATACACACAATTT     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020680

CCATAGAGAGAAATTTTTAATTGTGACAGGAATATGAGTGGTACACCACATGTTTTTATGTAAGTAGTGGGAAATTTTATTTTTTAAGTTATTAACTTTTTAACACACATATCCTACCATTTATATAATAACACGTAGTGTACCATCTCGTGTGATGGTCATATTGAAAAATCTCTCCCATAGA

Copy Cancel