Plant MITE

SE3020681

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_818
Malus domestica
SE3020681
Mutator
MadM9
MDC000569.470:475-716
CAGTTATAT
AATAAGGATCATCTCCGGATCCTCTTTGTGAGGATCTCAGGTATTCTCAAATCGTGTTCATTCATCGTACATCGTGCGGCCA

Secondary structure and sequence

TSD TIR

5'

3'

CAGTTATATA   A      A    C       C        -GA  T    T                 A                      -AAAAA  ATTTTAAATACTTTTATTTAA
          AAT AGGATC TCTC GGATCCT TTTGTGAG   TC CAGG ATTCTCAAATCGTGTTC TTCATCGTACATCGTGCGGCCA      TA                     
          ||| |||||| |||| ||||||| ||||||||   || |||| ||||||||||||||||| ||||||||||||||||||||||      ||                     A
          TTA TCCTAG AGAG CCTAGGA AAACATTC   AG GTCC TAGGAGTTTAGTACAGG AAGTAGCATGTAGCACGCTGGT      CA                     
TATATTGACC   C      G    A       A        ATA  -    C                 C                      CAAAAA  GTTCATGATAAGTATAAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020681

CAGTTATATAAATAAGGATCATCTCCGGATCCTCTTTGTGAGGATCTCAGGTATTCTCAAATCGTGTTCATTCATCGTACATCGTGCGGCCAAAAAATAATTTTAAATACTTTTATTTAAAATTAAATATGAATAGTACTTGACAAAAACTGGTCGCACGATGTACGATGAACGGACATGATTTGAGGATCCCTGGAATACTTACAAAAAGGATCCAGAGAGGATCCTCATTCCAGTTATAT

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