SE3020684

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_821
  • Malus domestica
  • SE3020684
  • Mutator
  • MadM74
  • MDC001542.287:7606-8033
  • TTAATCCTT
  • GAACAATACTTGGCTACTCAAAGATAAGTAGGAACTCCTACTCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATCCTT                         A                     CTCTTA   TTTTAATCACAGAGCTTTGTGTTTATGATCAGAACCGTTTATACTATGAATCACATTGTAAAGATCACCTATGCAAAAAATAAATTAAAACTAAGGTCATTTAGTCAATCTATTGTAGCAAATACGTAGACAGTTCGTAATGCTTTTAC
         GAACAATACTTGGCTACTCAAAGAT AGTAGGAACTCCTACTCAAAA      GTG                                                                                                                                                     
         ||||||||||||||||||||||||| |||||||||||||||||||||      |||                                                                                                                                                     C
         CTTGTTATGAACCGATGAGTTTCTA TCATCCTTGAGGATGAGTTTT      GTT                                                                                                                                                     
TTCCTAATT                         C                     -AAATA   TTAATAAGCAACAGTTGAATATCTTGAAGCGCAAATATTAGTCTTGGTAAGTATAATATTTAGTGGGATATTTCTAGCAGCGATGTTTTTTAGTTAATTTTGATTCCAGCAAATCAATAGTTTGACAAATTTTTGTTTACTTGCTATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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