Plant MITE

SE3020687

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_824
Malus domestica
SE3020687
Mutator
MadM48
MDC000306.525:936-1150
ATTTCTAAC
GGAAGATGATCCTCTCCTGAGCTCAGGATGGGGATCCTCTTGACCACAAAATTCGGGCCCTTCAAATTTAATCCAACGGTTGCAA

Secondary structure and sequence

TSD TIR

5'

3'

ATTTCTAAC      T                                  G     A           C           T         G   TTATTATAACTTTT G   GC
         GGAAGA GATCCTCTCCTGAGCTCAGGATGGGGATCCTCTT ACCAC AAATTCGGGCC TTCAAATTTAA CCAACGGTT CAA              A AGG  
         |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||| |||              | |||   
         CCTTCT CTAGGAGAGGACTCGAGTCCTACCCTTAGGAGGA TGGTG TTTAGGCCTGG AAGTTTAAATT GGTTGCCAA GTT              T TCC  
CAATCTTTA      C                                  A     C           C           -         A   -------------- G   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020687

ATTTCTAACGGAAGATGATCCTCTCCTGAGCTCAGGATGGGGATCCTCTTGACCACAAAATTCGGGCCCTTCAAATTTAATCCAACGGTTGCAATTATTATAACTTTTAGAGGGCTTCCTGTTTGAAACCGTTGGTTAAATTTGAACGGTCCGGATTTCGTGGTAAGGAGGATTCCCATCCTGAGCTCAGGAGAGGATCCTCTTCCATTTCTAAC

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