SE3020689

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_826
  • Malus domestica
  • SE3020689
  • Mutator
  • MadM11
  • MDC019531.466:5947-6108
  • GGAAAAAGG
  • AGGGGTGTGATATCTACACACTATTTTTTACTTCTCACATATCCTTTTAATTTTCGGCCGTCGGATCGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GGAAAA         A          CTA          C       TC      ---    TC GC   CG    GG  GAA
      AGGGGTGTG TATCTACACA   TTTTTTACTT TCACATA  CTTTTA   ATTT  G  CGT  GATC  AT   
      ||||||||| ||||||||||   |||||||||| |||||||  ||||||   ||||  |  |||  ||||  ||   T
      TCCCTACAC ATAGGTGTGT   GAAAAATGAA AGTGTGT  GAAAAT   TAAA  C  GTA  CTAG  TA   
AAAAGG         G          AGG          A       -T      AAT    TA -A   AA    AA  AGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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