SE3020691

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_828
  • Malus domestica
  • SE3020691
  • Mutator
  • MadM11
  • MDC007928.208:17613-17777
  • TGAGCCAAG
  • TGAGCCAAGGYTAGTGCTATTCACACATCCCATTTTACCTCTCACACACCCTTGTTAAATTTTTGTCCATTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
  A  -     YTA        C     T        -                 G    A      T  A   -   TTCTTCA
TG GC CAAGG   GTGCTATT ACACA CCCATTTT ACCTCTCACACACCCTT TTAA TTTTTG CC TTG ATC       
|| || |||||   |||||||| ||||| |||||||| ||||||||||||||||| |||| |||||| || ||| |||       A
AC CG GTTCC   CACGATAG TGTGT GGGTAAAA TGGAGAGTGTGTGGGAA AGTT AAAGGC GG AGC TAG       
  -  A     CAC        A     -        A                 G    -      C  C   C   CTTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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