SE3020692

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_829
  • Malus domestica
  • SE3020692
  • Mutator
  • MadM11
  • MDC013681.186:13290-13453
  • ATAATAATG
  • ATGGGGTGTGATATCCACACACCCCTTTTTACTTCTCACACACCCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAATA                        C                       GTTAA    TGTCT     TCTTCTTCAAT
      ATGGGGTGTGATATCCACACACCC TTTTTACTTCTCACACACCCTTT     TTTC     GTTGA           
      |||||||||||||||||||||||| |||||||||||||||||||||||     ||||     |||||            
      TACCCTACACTATAGGTGTGTGGG AAAAATGAAGAGTGTGTGGGAAG     AAAG     GTAAG           
TAATAA                        A                       -ATTA    ---CC     TTTAGCTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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