Plant MITE

SE3030698

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_835
Malus domestica
SE3030698
hAT
Madh8
MDC014061.101:9088-9876
ATTGTAGC
CAGTGGCGGATCCAT

Secondary structure and sequence

TSD TIR

5'

3'

ATTGTAGC   T      T    GAAATAATGTTT  -        CAA    A    CCGCAGCGCGAAATTTTTTTTTAACAGAAACGGCATGCATATCGTCATTTCATCGGATCTTGGTAGGATAGCGTGATCAGCCTCTCGCCGATAGTTACCATACTAAAAGGTGCCTTCACTTTCCCTGACAACAAAAAATAAACATAAAATTGGGTTGGATGGTTCATAATAAACATAAAATTCTGATATGGTGGTTCATAATAATATTTTTTAGAGATCATATTAATTTATGTTGAATATAAAGAGAAATAAAGTTGTTAAATATGTGGATGTGGAAAGGGCACACACATCATTACCATTAATTTATGTCAAATATGTGGATGTGGACGCATGGGAACTTTGCA
        CAG GGCGGA CCAT            GG GGGGTCAA   GGAT GCGC                                                                                                                                                                                                                                                                                                                                                        
        ||| |||||| ||||            || ||||||||   |||| ||||                                                                                                                                                                                                                                                                                                                                                        A
        GTC CCGCCT GGTG            TC CCCCAGTT   CCCC AGCG                                                                                                                                                                                                                                                                                                                                                        
CGATGTTA   T      C    ------------  A        --A    -    TGCTGGGGAACCTTCGGTACCTTTATTGGAATCTCCAGGGAACCTCGACGACCACGCTGGGGAATTTCGACGACCACGCTGGAGAACCTAGACGACGTAAAAAGACCCAAAGAAGACCAAAAGCAAGCCAAACCGCCTTCTCCTTCTGCTTCTGCTTCTGCAAGAGAGAGAAGGAAAGTGTGGTGCACTGGTGTGTGAGAAGAATAAATTAAAAAAAAGAATCAAAGAGAGGCTAGTTTAAACATGTCGATCGTAGTTTAACGAACGAAACACATTTTTCGGTATCCGACAGTCAAGCCAAGCACACAGTTCAACTTCTACAGTGGTAATTCAGAACCACGTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3030698

ATTGTAGCCAGTGGCGGATCCATGAAATAATGTTTGGGGGGTCAACAAGGATAGCGCCCGCAGCGCGAAATTTTTTTTTAACAGAAACGGCATGCATATCGTCATTTCATCGGATCTTGGTAGGATAGCGTGATCAGCCTCTCGCCGATAGTTACCATACTAAAAGGTGCCTTCACTTTCCCTGACAACAAAAAATAAACATAAAATTGGGTTGGATGGTTCATAATAAACATAAAATTCTGATATGGTGGTTCATAATAATATTTTTTAGAGATCATATTAATTTATGTTGAATATAAAGAGAAATAAAGTTGTTAAATATGTGGATGTGGAAAGGGCACACACATCATTACCATTAATTTATGTCAAATATGTGGATGTGGACGCATGGGAACTTTGCAATCTGCACCAAGACTTAATGGTGACATCTTCAACTTGACACACGAACCGAACTGACAGCCTATGGCTTTTTACACAAAGCAAGCAATTTGATGCTAGCTGTACAAATTTGATCGGAGAGAAACTAAGAAAAAAAATTAAATAAGAAGAGTGTGTGGTCACGTGGTGTGAAAGGAAGAGAGAGAACGTCTTCGTCTTCGTCTTCCTCTTCCGCCAAACCGAACGAAAACCAGAAGAAACCCAGAAAAATGCAGCAGATCCAAGAGGTCGCACCAGCAGCTTTAAGGGGTCGCACCAGCAGCTCCAAGGGACCTCTAAGGTTATTTCCATGGCTTCCAAGGGGTCGTGCGACCCCATTGACCCCACTGTGGCTCCGCCTCTGATTGTAGC

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