SE3020701

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_838
  • Malus domestica
  • SE3020701
  • Mutator
  • MadM117
  • MDC019388.413:3474-3663
  • ATAATATTT
  • AATATTTGAGAAATGCTAAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AT      -           A    AACCC       -    A       TC       CTCTCA        AGTTTAATGTTAGTTTCC      A  T   A
  AATATT TGAGAAATGCT AGGA     TCTCAAA GTGG ACTCTCT  ATGAGCT      CACCTCAT                  TTGCCA CA TAT 
  |||||| ||||||||||| ||||     ||||||| |||| |||||||  |||||||      ||||||||                  |||||| || ||| A
  TTATAA ACTTTTTACGA TCCT     AGAGTTT CACT TGAGAGA  TACTTGA      GTGGAGTA                  AACGGT GT ATA 
 T      T           C    ATTAA       T    A       --       AAAACG        ---------------AAA      -  T   A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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