SE3020704

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_841
  • Malus domestica
  • SE3020704
  • Mutator
  • MadM5
  • MDC009168.711:16840-17025
  • TAAAATTAG
  • GAGAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATTA           CAATA    C TC    A  A  A            CG    A   ATT      TATATG    -AAA     A
        GAGAAATTTTT     TGAC G  ACAT GG TG TACATCACGTGT  TTAT TAA   GTGGGA      TGTT    AAGTT 
        |||||||||||     |||| |  |||| || || ||||||||||||  |||| |||   ||||||      ||||    ||||| A
        CTCTTTAAAAA     ACTG C  TGTG TC AC ATGTGGTGCACA  AATA ATT   TACTCT      ATAA    TTTAA 
TTAAAATC           TCAAC    C CT    C  -  C            AA    C   CAC      -TTAAA    AAGA     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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