SE3020708

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_845
  • Malus domestica
  • SE3020708
  • Mutator
  • MadM118
  • MDC017783.112:17867-18080
  • AAATCAAAG
  • GGAATTGGATCCTCTCCTGAGCGGGAGATTAGGATCCTCCTGACCCAATAACACGGGCCRTTGKATTTTGATMMAACGGCTACAAATAAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATCAAAG                C                 TCC        CAA         C R   K  T     MM     C     A  -----------    AT
         GGAATTGGATCCTCTC TGAGCGGGAGATTAGGA   TCCTGACC   TAACACGGG C TTG AT TTGAT  AACGG TACAA TA           AGGA  
         |||||||||||||||| |||||||||||||||||   ||||||||   ||||||||| | ||| || |||||  ||||| ||||| ||           ||||   
         CCTTAACCTAGGAGAG ACTCGTCCTTTAGTTCT   AGGACTGG   ATTGTGCCT G AAC TA AATTA  TTGCC ATGTT AT           TCTT  
GAAACTAAA                A                 ---        ATG         A C   C  R     RG     R     A  AATATKAAAAA    MC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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