Plant MITE

SE3020711

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_848
Malus domestica
SE3020711
Mutator
MadM10
MDC011188.384:19609-19848
TATTTATAC
TATTTATACGGAGGCAGATTGTTTGCCCTCCTGTTTGGATGCCCTTCCCATCCCCTTCTATTTGTCCGGTCATAGTTAAGCCACGTCAACATTTTATATTCTTATTGTTTTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

    TT   C   G  A                    G A  C C   C         C     -  C       A                          CTT   G        CTTATT
 TAT  ATA GGA GC GATTGTTTGCCCTCCTGTTT G TG C TTC CATCCCCTT TATTT GT CGGTCAT GTTAAGCCACGTCAACATTTTATATT   ATT TTTTTTGT      
 |||  ||| ||| || |||||||||||||||||||| | || | ||| ||||||||| ||||| || ||||||| ||||||||||||||||||||||||||   ||| ||||||||       
 ATA  TAT CCT CG CTAACAGACGGGAGGATAAA C AC G AAG GTAGGGGAG ATAAA CA GCTAGTG CAATTCGGTGCAGTTGTAAAATATAA   TAA AAAAAATA      
C   TT   -   A  C                    G C  A A   A         A     A  C       C                          --T   -        TCTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020711

TATTTATACGGAGGCAGATTGTTTGCCCTCCTGTTTGGATGCCCTTCCCATCCCCTTCTATTTGTCCGGTCATAGTTAAGCCACGTCAACATTTTATATTCTTATTGTTTTTTGTCTTATTATCTCTATAAAAAAAATTAATATAAAATGTTGACGTGGCTTAACCGTGATCGCACAAAATAAGAGGGGATGAGAAAGACACCGAAATAGGAGGGCAGACAATCCGCATCCTATTTATAC

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