Plant MITE

SE3050718

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_855
Malus domestica
SE3050718
PIF/harbinger
MadP9
MDC007017.578:10404-10619
TTA
CTGGTTTGGTACTGAGGTGCTTTTATAAAAAGTG

Secondary structure and sequence

TSD TIR

5'

3'

TTAGTA           C  AG       --TAT     G  GGTATAAAAAAAA    A   AAAAA    - --A  GGTAAACACTTAAAAACAGCTTATTTTCACAGTTTTGG
      CTGGTTTGGTA TG  GTGCTTT     AAAAA TG             GCTG GCT     AGGT G   TT                                      
      ||||||||||| ||  |||||||     ||||| ||             |||| |||     |||| |   ||                                       
      GATCAAACCAT AC  CATGAAA     TTTTT AC             CGAC CGA     CACT C   TC                                      
ATTCCC           A  GA       CTTTT     G  --------GAAGA    A   -----    C TAT  GAATAAAAACGACGAAGTGCAAAAGTCGAAAAAAAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050718

TTAGTACTGGTTTGGTACTGAGGTGCTTTTATAAAAAGTGGGTATAAAAAAAAGCTGAGCTAAAAAAGGTGATTGGTAAACACTTAAAAACAGCTTATTTTCACAGTTTTGGGTGAAAAAAAGCTGAAAACGTGAAGCAGCAAAAATAAGCTTATCCTCACAGCACAGCAGAAGCAGTTTTTTTTTCAAAGTACAGCAATACCAAACTAGCCCTTA

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