SE3030720

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_857
  • Malus domestica
  • SE3030720
  • hAT
  • Madh19
  • MDC005055.1000:832-1356
  • ATTTTAGC
  • CAATGTTCTAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 ATTTTAG   T         A    C       -  - GCCTAGGCACTAGGTGGTGGTGAGCCGATGCGTTTTCTTGCAAATCAGTTGGAAAAATCGGATGGGCTCTAGGTGGCTAGGCGGGGCTAGGAGGTTTTTTTTAATYAAATTAAAAATAAAAAAAATAAAAAATCCTATCTAAGTCTAAGTGGTTTAAAATTGTGAACTTGTTGTACATGTGTCATCCTACAATACTCCTTAATATGGTTATTTGGCATATATGCT
        CAA GTTCTAAAA AGGG TTAGGCG GC C                                                                                                                                                                                                                                 
        ||| ||||||||| |||| ||||||| || |                                                                                                                                                                                                                                 T
        GTT CAAGATTTT TGCG ATCCGCG TC G                                                                                                                                                                                                                                 
GATTTTTA   T         A    -       A  A CCCACCGCCCGACCGCGGATCGCGAATCCGACGACCCATCCCAGATCCGCCCATGGATCCGCCGGATCCGTCTAAATCCATTTAAAGAACATATAGAACATTTATTCACGTATAACTGTGAATGTTTTTTAATATGAACATACTTTAGATACCTATTCTATTATTTTTTTACTTTTTTTTTTACATTTTTCTCATAGGTTGTTCAGGTTTTAAATTTTTGTGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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