Plant MITE

SE3020726

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_863
Malus domestica
SE3020726
Mutator
MadM19
MDC025075.15:17489-17706
ATCGATTTC
ATCGAT

Secondary structure and sequence

TSD TIR

5'

3'

          TTCC                               A               TCA                                   -------------AC    G
    ATCGAT    GGACCAGGATCCTCTCCTGAGCTAAGGATGA GATCCTCCTCATCAA   GTGTGGGCCGTTGGATGAAAATCCAACGGCTACAA               AGGG 
    ||||||    ||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||               |||| G
    TAGCTA    CCTGGTCCTAGGAGAGGACTCGATTCCTACT CTAGGAGGAGTAGTT   TACATCCGGCAACCTACTTTTAGGTTGCCGATGTT               TCCC 
CCTT      ----                               C               CTC                                   AATAATATTGAAATT    T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020726

ATCGATTTCCGGACCAGGATCCTCTCCTGAGCTAAGGATGAAGATCCTCCTCATCAATCAGTGTGGGCCGTTGGATGAAAATCCAACGGCTACAAACAGGGGGTCCCTTTAAAGTTATAATAATTGTAGCCGTTGGATTTTCATCCAACGGCCTACATCTCTTGATGAGGAGGATCCTCATCCTTAGCTCAGGAGAGGATCCTGGTCCATCGATTTCC

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