SE3020728

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_865
  • Malus domestica
  • SE3020728
  • Mutator
  • MadM10
  • MDC015796.374:457-696
  • TATTTTTGT
  • GGACAAGGATTGTCTGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTTGT                  CTGCCA                       C  AT            C                                  TTTATAAAGATA
         GGACAAGGATTGTCTGCC      TTTTTCATGCCCTTCCATGCCCT CT  TTTGTGTGGTCA GGTTAAGCCACGTTAACATTTTATATTATTATTT            
         ||||||||||||||||||      ||||||||||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||            A
         CCTGTTCCTAACAGACGG      AAAAGGTACGGGAAGGTACGGGA GA  AAACACACCAGT CCAATTTGGTGCAGTTGTAAAATATAATGATAAG            
TGTTTTTAT                  AAGAAG                       A  -C            A                                  TAAAAACAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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