SE3030733

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_870
  • Malus domestica
  • SE3030733
  • hAT
  • Madh20
  • MDC020257.99:6404-6809
  • CCTGCAGA
  • CTGCAGACAGTGGCGGATCCA

Secondary structure and sequence

TSD    TIR
5'



3'
C      A  G    G      GGAAATAATATT            --AAGAA     -    CAAC   -   ATTTTTTTATTCTAGAAATAGCATGCATATTGTCATTTCATCGAGTCTTGGTAGGCTTGAAGTTATTTGAAAATGCATACTACAGACATGTTAATGTAAGCAAGGGGCAGCACCCAAGGTATTCATGGACATT
 CTGCAG CA TGGC GATCCA            AGGGGGGTCAGT       TAGTG TGCG    GTG AAA                                                                                                                                     
 |||||| || |||| ||||||            ||||||||||||       ||||| ||||    ||| |||                                                                                                                                      
 GACGTC GT ACCG CTAGGT            TCCCCCCAGTCG       GGCTT AAGC    CTT CAG                                                                                                                                     
A      C  G    A      --AATTCCCCGT            ACTGGGG     G    --TA   G   GTATCTGTGGAATTCACGACTGGGAGGCTTGAAGCCACTTATAGGTACCTATGGAACTCACAACGGGAAAACTTCTAATCTCAACCGAAGTATGAACGGGAGGTTGGCTGAAGTCCGGATGGTTTTGGACTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End