SE3020734

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_871
  • Malus domestica
  • SE3020734
  • Mutator
  • MadM11
  • MDC021912.336:37188-37348
  • ATTTTTAGG
  • TAGGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACCCTTCTAATTTTCGGCCGTCGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTT          A               TT                   -C       CGG    CG    GGATGAA
     TAGGGGTGTG TATCCACACACCCCA  TTACTTCTCACACACCCTT  TAATTTT   CCGT  GATC       
     |||||||||| |||||||||||||||  |||||||||||||||||||  |||||||   ||||  ||||       T
     ATCCCCACAC ATAGGTGTGTGGGGT  AATGAAGAGTGTGTGGGAA  ATTAAAG   GGCA  CTAG       
TTTTT          G               TT                   CA       ATA    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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