Plant MITE

SE3020737

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_874
Malus domestica
SE3020737
Mutator
MadM57
MDC002228.505:5210-5469
GTGAAATTT
GGATTTGGATGCTCGCCGAATCCCCTCCTTGGGGATCCTAGGGATCAACAAACACAGACCGTT

Secondary structure and sequence

TSD TIR

5'

3'

GTGAAATTT          G  C    A    C                         A     A       AATC           T   A     TTTTTC              ----------  T   AAA
         GGATTTGGAT CT GCCG ATCC CTCCTTGGGGATCCTAGGGATCAAC AACAC GACCGTT    AAAAATCGTGC GTC CAATT      TTTTTTATATTTTT          CA GCA   
         |||||||||| || |||| |||| ||||||||||||||||||||||||| ||||| |||||||    ||||||||||| ||| |||||      ||||||||||||||          || |||    
         CCTAAACCTA GA CGGC TAGG GAGGGACCCCTAGGATTCCTAGTTG TTGTG CTGGTAA    TTTTTAGCACG CAG GTTAA      GAAAAATATAAAAA          GT CGT   
TTTAAAGTG          A  A    C    A                         C     C       CTWT           C   G     -TTTAC              TTTTCATTTC  -   AGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020737

GTGAAATTTGGATTTGGATGCTCGCCGAATCCCCTCCTTGGGGATCCTAGGGATCAACAAACACAGACCGTTAATCAAAAATCGTGCTGTCACAATTTTTTTCTTTTTTATATTTTTCATGCAAAACGATGCTGCTTTACTTTTAAAAATATAAAAAGCATTTAATTGGGACCGCACGATTTTTTWTCAATGGTCCGTGTTCGTTGATCCTTAGGATCCCCAGGGAGAGGATCCGGCAAGAATCCAAATCCGTGAAATTT

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