Plant MITE

SE3020739

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_876
Malus domestica
SE3020739
Mutator
MadM11
MDC009011.399:4319-4480
AAAAATAGA
TAGAGATGTGATATCCACACATCCTATTTTACTTCTCACATA

Secondary structure and sequence

TSD TIR

5'

3'

AAAAA   A           C       C                  -CCCC     AA    T T      -   TTCTTCA
     TAG GATGTGATATC ACACATC TATTTTACTTCTCACATA     TTGAT  TTTC G CTGTTG ATC       
     ||| ||||||||||| ||||||| ||||||||||||||||||     |||||  |||| | |||||| |||       A
     ATC CTACACTATAG TGTGTAG GTAAAATGAAGAGTGTGT     AATTA  AAAG C GGCAGC TAG       
TAAAA   C           A       A                  AAAAA     --    C -      C   CCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020739

AAAAATAGAGATGTGATATCCACACATCCTATTTTACTTCTCACATACCCCTTGATAATTTCTGTCTGTTGATCTTCTTCAATTCATCCGATCCGACGGCCGAAAATTAAAAAAATGTGTGAGAAGTAAAATGAGATGTGTAGATATCACATCCCTAAAAAT

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