SE3020740

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_877
  • Malus domestica
  • SE3020740
  • Mutator
  • MadM14
  • MDC012607.98:18566-19030
  • TTACTATAT
  • GAGAAAATTGTAGTAATGGTCCCTCAACTTTAACCTAATTAGAGTAATGGTCCCTCAACTAAAAATCTATAAGCATTGGTCATTTAACTCCTCAA

Secondary structure and sequence

TSD    TIR
5'



3'
TTACTATAT                                  C     A                         C   AAG       CA        C    TACA     A             TTC     C       C                ------CAC   T  --   -   -TGA  C    -        - AAATA   AAAACCAAATCAGAAAAATTGTAGCA
         GAGAAAATTGTAGTAATGGTCCCTCAACTTTAAC TAATT GAGTAATGGTCCCTCAACTAAAAAT TAT   CATTGGT  TTTAACTC TCAA    TGTAG TATGGTCATTTTC   AACTC GTTAGAA TTTCGTCAAAATGAGT         ATG CC  TGC ACA    GG TGAA TTGATGGG C     TGG                          
         |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||   |||||||  |||||||| ||||    ||||| |||||||||||||   ||||| ||||||| ||||||||||||||||         ||| ||  ||| |||    || |||| |||||||| |     |||                           
         TTTTTTTAACATCGTTATTAGGGAGTTGAAATTG GTTAA CTCGTTACTAGGGAGTTGATTTTTA GTA   GTAACCA  AAATTGAG AGTT    ACGTT ATACCAGTAAAAG   TTGAG TAGTCTT AAGGTAGTTTTACTCA         TAC GG  ACG TGT    CC ATTT AACTACCT G     GAG                          
TATATCATT                                  A     C                         A   CTA       AA        T    TTAC     G             TAA     A       -                ATATACCCT   T  TA   A   TAAA  A    C        A --AAC   TTTAACCCAATTTTAACTCCCTAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End