SE3020743

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_880
  • Malus domestica
  • SE3020743
  • Mutator
  • MadM15
  • MDC003917.291:53683-53899
  • CAACCAACA
  • GGAAAGGGATCCTCTCCATATCCCTTCCACCAAATCCACCCAATCACTCAATCCGGGCCGTTGAAATTTGATCCAACAGCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAACCAACA                 AT   C    C            C     C      C     G            CC   A     AAAC     GTCCCTTTA
         GGAAAGGGATCCTCTCC  ATC CTTC ACCAAATCCACC AATCA TCAATC GGGCC TTGAAATTTGAT  AAC GCTAA    AGAGG         
         |||||||||||||||||  ||| |||| |||||||||||| ||||| |||||| ||||| ||||||||||||  ||| |||||    |||||         A
         CCTTTCCCTAGGAGAGG  TAG GAAG TGGTTTAGGTGG TTAGT GGTTAG CCTGG AACTTTAAACTA  TTG CGATT    TCAAT         
ACAACCAAC                 CC   A    A            T     A      A     G            AT   C     ----     AATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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