Plant MITE

SE3020744

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_881
Malus domestica
SE3020744
Mutator
MadM8
MDC004678.225:7592-7776
TCTAAAACA
GTAATGCTAGGTAGACCAAAATTTTAAACTAAATTTGCAAACCAAATTATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TCTAAAACA           T             A      -A    C         T     ----TAA  AATAGGAAATAAGCATGTTAATC
         GTAATGCTAGG AGACCAAAATTTT AACTAA  TTTG AAACCAAAT ATGTG       CC                       
         ||||||||||| ||||||||||||| ||||||  |||| ||||||||| |||||       ||                        
         CATTACGATTC TCTGGTTTTAAAA TTGGTT  AAAC TTTGGTTTA TACAC       TA                       
AATCTTTTC           T             C      CA    A         C     CAACAAC  TTAACCTAATAATGAATTCACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020744

TCTAAAACAGTAATGCTAGGTAGACCAAAATTTTAAACTAAATTTGCAAACCAAATTATGTGTAACCAATAGGAAATAAGCATGTTAATCAACACTTAAGTAATAATCCAATTATCAACAACCACATCATTTGGTTTACAAAACTTGGTTCAAAATTTTGGTCTTCTTAGCATTACCTTTTCTAA

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