SE3050748

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_885
  • Malus domestica
  • SE3050748
  • PIF/harbinger
  • MadP23
  • MDC013644.409:16863-17034
  • TTT
  • AGGGTAATGCTAGGTAGACCAACTTTTCAAACTAAATTTGCAAACTAAATAATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT                  C   C    CA     A    GCA        AA    ----TCACTAATG   AATAAGCAAATCAA
   AGGGTAATGCTAGGTAGA CAA TTTT  AACTA ATTT   AACTAAAT  TGTG             GGA              
   |||||||||||||||||| ||| ||||  ||||| ||||   ||||||||  ||||             |||               
   TCCCATTACGATCTATCT GTT AAAA  TTGAT TAAA   TTGATTTA  ACAC             CCT              
TTT                  T   T    --     G    ACA        CA    CAACAACTAGTAA   AATAATAAATTCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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