SE3020752

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_889
  • Malus domestica
  • SE3020752
  • Mutator
  • MadM9
  • MDC017836.167:2624-2860
  • GTGTTTAAA
  • AAGCAATTGGATCCCATTCAAATTCACTGTGGGGATCCTAAAGATCCTTACATCTTAGCCGTTCATCGTGTATCGTGCGGTCAGAAATCATTTAACTTTGTTATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
GTGTTTA     ----ATT      CA   A        --                              CC                        AAA  A  --TA   --    TA    AA
       AAGCA       GGATCC  TTC AATTCACT  GTGGGGATCCTAAAGATCCTTACATCTTAG  GTTCATCGTGTATCGTGCGGTCAG   TC TT    ACT  TTGT  TTTA  
       |||||       ||||||  ||| ||||||||  ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||   || ||    |||  ||||  ||||   
       TTTGT       TCTAGG  AGG TTAGGTGA  CATCTCTAGGATTTCTAGGAGTGTAGGATC  CAAGTAGCATGTAGCACGTCGGTC   AG AG    TGA  AACA  AAAT  
    AAA     GCCTTCT      AG   C        AA                              AA                        AAA  C  TCTA   TA    -C    TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End