Plant MITE

SE3020758

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_895
Malus domestica
SE3020758
Mutator
MadM5
MDC000076.839:25210-25397
CACATGATG
CATGATGGAGAGATTTTTTAGTTTGACTGGAACACGGAGTTGTACACCACGTGTCATTATA

Secondary structure and sequence

TSD TIR

5'

3'

 CA    A         T     GTT    T      C  A  T             CA     TCAA      -  TA     GCTAAA     A
   CATG TGGAGAGAT TTTTA   TGAC GGAACA GG GT GTACACCACGTGT  TTATA    TGGTGG AA  TGTGT      AAGTT 
   |||| ||||||||| |||||   |||| |||||| || || |||||||||||||  |||||    |||||| ||  |||||      ||||| A
   GTAC ACCTCTTTA AAAGT   ACTG CCTTGT CC CA CATGTGGTGCACA  AATAT    ACCACC TT  ACATA      TTCAA 
GTA    -         C     AAC    C      A  -  C             AA     MTTC      C  TA     -AAAAA     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020758

CACATGATGGAGAGATTTTTTAGTTTGACTGGAACACGGAGTTGTACACCACGTGTCATTATATCAATGGTGGAATATGTGTGCTAAAAAGTTAATAACTTAAAAAATACAATTTCCCACCACTTMTATAAAAACACGTGGTGTACCACCCATGTTCCCGTCACAATGAAACATTTCTCCACATGATG

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