SE3020759

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_896
  • Malus domestica
  • SE3020759
  • Mutator
  • MadM32
  • MDC002768.343:956-1142
  • ATATTAATG
  • GAGTAATGCTAGGGAGATCAAATTTTTTAAACCAAATTTGCAAACTAAATGATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATTAAT        C       ATC            C    TT      C           GTTGAAGATMAT     TATT   M     T  AT
        GAGTAATG TAGGGAG   AAATTTTTTAAA CAAA  TGCAAA TAAATGATGTG            TGGAT    AAT AAGTG CG  
        |||||||| |||||||   |||||||||||| ||||  |||||| |||||||||||            |||||    ||| ||||| ||  T
        CTCATTAC ATCCTTC   TTTAAAAAATTT GTTT  ACGTTT GTTTACTACAC            ATTTA    TTG TTCGT GC  
AATTATAT        T       RGA            A    -T      A           ---------AGT     TTCT   -     -  AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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