Plant MITE

SE3020760

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_897
Malus domestica
SE3020760
Mutator
MadM121
MDC015958.120:3559-3786
TATCTTAAA
AGGATTTGGATCCGTTCCAGACATTAATGTCAGGAGCCTCCAAGTCAACAAATCTGAGTCGCACAAATTGAATC

Secondary structure and sequence

TSD TIR

5'

3'

TATCTTAA        GA            A   A    A     C   A   CA         A     ---------------A      -     AAACGGTCTCCATTAATTCATTTT
        AGGATTTG  TCCGTTCCAGAC TTA TGTC GGAGC TCC AGT  ACAAATCTG GTCGC                CAAATT GAATC                        
        ||||||||  |||||||||||| ||| |||| ||||| ||| |||  ||||||||| |||||                |||||| |||||                         
        TCCTAAAC  AGGTGAGGTCTG AAT ACAG CCTCG AGG TCA  TGTTTAGAC CAGCG                GTTTAA CTTGG                        
AAATTCTA        AT            G   C    A     A   C   AG         C     ACTAACCACACATTCA      T     CAACTAACACACACCACGCAATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020760

TATCTTAAAGGATTTGGATCCGTTCCAGACATTAATGTCAGGAGCCTCCAAGTCAACAAATCTGAGTCGCACAAATTGAATCAAACGGTCTCCATTAATTCATTTTTCTAACGCACCACACACAATCAACGGTTCTAATTTGACTTACACACCAATCAGCGACCCAGATTTGTGAACTCGGAAGCTCCAGACACTAAGGTCTGGAGTGGATACAAATCCTATCTTAAA

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