Plant MITE

SE3020761

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_898
Malus domestica
SE3020761
Mutator
MadM15
MDC006147.251:254-470
GCTATCTAC
CGGAAATGGATTATCTTCGGATCCCTTCCTCCTAATCCATTAAGTCTGGAGATCCAGACCATTGAAATTTGATCCAACTGCTA

Secondary structure and sequence

TSD TIR

5'

3'

GCTATCTA      T     A     G                 C        C   A    CA                  C   T    CAAAC    GCCCACTTTAA
        CGGAAA GGATT TCTTC GATCCCTTCCTCCTAAT CATTAAGT TGG GATC  GACCATTGAAATTTGATC AAC GCTA     AGGG           
        |||||| ||||| ||||| ||||||||||||||||| |||||||| ||| ||||  |||||||||||||||||| ||| ||||     ||||            
        GCCTTT CCTAG AGAGG CTAGGGAAGGAGGATTA GTGGTTCA ACC CTAG  CTGGTAACTTTAAACTAG TTG CGAT     TTCA           
CATCTATC      C     G     G                 A        A   C    AC                  A   T    -----    ATAATATTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020761

GCTATCTACGGAAATGGATTATCTTCGGATCCCTTCCTCCTAATCCATTAAGTCTGGAGATCCAGACCATTGAAATTTGATCCAACTGCTACAAACAGGGGCCCACTTTAAAAGTTATAATAACTTTAGCTGTTAGATCAAATTTCAATGGTCCAGATCCCCAAACTTGGTGAATTAGGAGGAAGGGATCGGGAGAGGATCCCTTTCCGCTATCTAC

Copy Cancel